diff --git a/scripts/functions/wideP_consurf.R b/scripts/functions/wideP_consurf.R index e32f446..bf22052 100644 --- a/scripts/functions/wideP_consurf.R +++ b/scripts/functions/wideP_consurf.R @@ -28,8 +28,8 @@ wideP_consurf <- function(plot_df , "1": "Variable" , "2", "3", "4", "5", "6", "7", "8" , "9": "Conserved") - , panel_col = "black" - , panel_col_fill = "black" + , panel_col = "white" + , panel_col_fill = "white" # axes title and label sizes , x_axls = 12 # x-axis label size @@ -241,7 +241,7 @@ wideP_consurf <- function(plot_df , colour = sprintf("factor(%s)", yvar_colourN_colname) )) - "if SPECIAL do SPECIAL THING, otherwise do NORMAL THING" + #"if SPECIAL do SPECIAL THING, otherwise do NORMAL THING" if (plot_type == "bar"){ g0 = g + geom_bar(stat = "identity") @@ -282,8 +282,8 @@ wideP_consurf <- function(plot_df , axis.title.x = element_text(size = x_axls) , axis.title.y = element_text(size = y_axls ) , panel.background = element_rect(fill = panel_col_fill, color = panel_col) - , panel.grid.major = element_line(color = "black") - , panel.grid.minor = element_line(color = "black") + #, panel.grid.major = element_line(color = "black") + #, panel.grid.minor = element_line(color = "black") , plot.title = element_text(size = pts , hjust = 0.5) , plot.margin = margin(t = t_margin @@ -338,7 +338,7 @@ wideP_consurf <- function(plot_df cat("\nColouring x-axis aa based on", lig_dist_colname , "\nNo. of colours:", n_colours) - g2 = g1 + geom_tile(aes(, 2 + g2 = g1 + geom_tile(aes(, tpos0 # g2 = g1 + geom_tile(aes(, tpos0 , width = tW0 @@ -373,7 +373,8 @@ wideP_consurf <- function(plot_df cat("\nDoing Plot with 3 ligands") } - out = out + geom_tile(aes(,tpos3 + #out = out + geom_tile(aes(,tpos3 + out = out + geom_tile(aes(,2 , width = tW , height = tH ) , fill = plot_df[[aa_colour_colname3]] @@ -504,3 +505,13 @@ wideP_consurf <- function(plot_df #return(out2) } + + +wideP_consurf( + merged_df3, + A_xvar_aa = T, + active_aa_pos = active_aa_pos, + aa_pos_lig1 = aa_pos_lig1, + aa_pos_lig2 = aa_pos_lig2, + aa_pos_lig3 = aa_pos_lig3, + debug=T) \ No newline at end of file