all barplots generated for ps and lig

scripts/plotting/notes

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+#####################
+# combining_two_df.R
+#####################
+orig_col ==> df_ncols
+Mutationinformation ==> mutationinformation
+Position ==> position
+DUET_outcome ==> duet_outcome
+Lig_outcome ==> ligand_outcome
+
+infile ==> infile_params
+in_filename_comb ==> in_filename_metadata
+meta_with_afor ==> gene_metadata
+
+#!!!!!!!!!
+# FIXME: plotting_data.R
+#!!!!!!!!!
+
+# This script will be called by various plotting scripts.
+# Ensure you can call this using command line args which are currently commented out
+
+#####################
+# basic_barplots_PS.R
+#####################
+dim(my_df)
+416, 86
+
+# unique mutations
+dim(my_df_u)
+403, 86
+
+# all dups identified are destabilising
+dups_df = 13 rows
+11 unique muts
+
+upos = unique(my_df_u$position)
+145
+
+df = my_df_u
+
+df$duet_outcome
+
+Destabilising   Stabilising 
+          346           57 
+                       
+                       
+                        # with dups
+                        Destabilising   Stabilising 
+                                  359            57 
+
+table(df$pos_count)
+# this is cummulative
+#1   2   3   4   5   6 
+#39  62  81 100  85  36 
+
+                        # with dups
+                          1   2   3   4   5   6   7 
+                         39  60  75  92 100  36  14 
+
+# use group by
+table(snpsBYpos_df$snpsBYpos)
+#1  2  3  4  5  6 
+#39 31 27 25 17  6 
+
+                         # with dups
+                          1  2  3  4  5  6  7 
+                          39 30 25 23 20  6  2