From 3ec42edc57bb8114c6112b78a990e35a7148eb0a Mon Sep 17 00:00:00 2001 From: Tanushree Tunstall Date: Mon, 22 Feb 2021 09:31:29 +0000 Subject: [PATCH] retrieved gid b7 and submitted b8,b9 and b10 --- dynamut/run_get_results_dynamut.py | 12 ++++++------ dynamut/run_submit_dynamut.py | 16 ++++++++++------ 2 files changed, 16 insertions(+), 12 deletions(-) diff --git a/dynamut/run_get_results_dynamut.py b/dynamut/run_get_results_dynamut.py index 211e341..1aab6f8 100644 --- a/dynamut/run_get_results_dynamut.py +++ b/dynamut/run_get_results_dynamut.py @@ -24,13 +24,13 @@ indir = datadir + '/' + drug + '/input' outdir = datadir + '/' + drug + '/output' #============================================================================== -# batch 6: 05.txt, # RETRIEVED -my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b6.txt' -my_suffix = 'gid_b6' +# batch 6: 05.txt, # RETRIEVED 21 Feb 16:22 +#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b6.txt' +#my_suffix = 'gid_b6' -# batch 7: 06.txt, # RETRIEVED -#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b7.txt' -#my_suffix = 'gid_b7' +# batch 7: 06.txt, # RETRIEVED 22 Feb 09:23 +my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b7.txt' +my_suffix = 'gid_b7' #============================================================================== diff --git a/dynamut/run_submit_dynamut.py b/dynamut/run_submit_dynamut.py index 0d6dfa9..ce67cbc 100644 --- a/dynamut/run_submit_dynamut.py +++ b/dynamut/run_submit_dynamut.py @@ -29,13 +29,17 @@ my_email = 'tanushree.tunstall@lshtm.ac.uk' my_pdb_file = indir + '/gid_complex.pdb' #============================================================================== -# batch 6: 05.txt, # RAN: -#my_mutation_list = outdir + '/snp_batches/50/snp_batch_05.txt' -#my_suffix = 'gid_b6' +# batch 8: 07.txt, # RAN: 22 Feb 09:26 +#my_mutation_list = outdir + '/snp_batches/50/snp_batch_07.txt' +#my_suffix = 'gid_b8' -# batch 7: 06.txt, # RAN: -my_mutation_list = outdir + '/snp_batches/50/snp_batch_06.txt' -my_suffix = 'gid_b7' +# batch 9: 08.txt, # RAN: 22 Feb 09:26 +#my_mutation_list = outdir + '/snp_batches/50/snp_batch_08.txt' +#my_suffix = 'gid_b9' + +# batch 10: 09.txt, # RAN:22 Feb 09:26 +my_mutation_list = outdir + '/snp_batches/50/snp_batch_09.txt' +my_suffix = 'gid_b10' #============================================================================== #==========================