From 3cb33df009245256469323b678dad228961b8d2a Mon Sep 17 00:00:00 2001
From: Tanushree Tunstall <tanu@tunstall.in>
Date: Wed, 15 Jul 2020 16:29:36 +0100
Subject: [PATCH] made tweaks to output plot filenames

---
 scripts/plotting/basic_barplots_PS.R | 22 +++++++++++-----------
 1 file changed, 11 insertions(+), 11 deletions(-)

diff --git a/scripts/plotting/basic_barplots_PS.R b/scripts/plotting/basic_barplots_PS.R
index 184fa99..123c6dd 100644
--- a/scripts/plotting/basic_barplots_PS.R
+++ b/scripts/plotting/basic_barplots_PS.R
@@ -20,7 +20,7 @@ getwd()
 
 #?????????????
 #
-
+#########################################################
 #%% variable assignment: input and output paths & filenames
 drug = 'pyrazinamide'
 gene = 'pncA'
@@ -46,12 +46,12 @@ cat(paste0('Input file 1:', infile_params) )
 # output
 #=======
 # plot 1
-duet_basic_bp = 'basic_barplots_DUET.svg'
-outfile_duet_basic_bp  =  paste0(outdir, '/plots/', duet_basic_bp)
+basic_bp_duet = 'basic_barplot_PS.svg'
+plot_basic_bp_duet  =  paste0(outdir, '/plots/', basic_bp_duet)
 
 # plot 2
-duet_pos_count = 'position_count_DUET.svg'
-outfile_duet_pos_count = paste0(outdir, '/plots/', duet_pos_count)
+pos_count_duet = 'position_count_PS.svg'
+plot_pos_count_duet = paste0(outdir, '/plots/', pos_count_duet)
 
 #%%===============================================================
 ###########################
@@ -109,9 +109,9 @@ library(ggplot2)
 #****************
 # Plot 1:Count of stabilising and destabilsing muts
 #****************
-#svg('basic_barplots_DUET.svg')
-svg(outfile_duet_basic_bp)
-print(paste0('plot filename:', duet_basic_bp))
+#svg('basic_barplots_PS.svg')
+svg(plot_basic_bp_duet)
+print(paste0('plot filename:', basic_bp_duet))
 
 my_ats = 25 # axis text size
 my_als = 22 # axis label size
@@ -178,9 +178,9 @@ foo = select(df, mutationinformation
 #write.csv(foo, "/pos_count_freq.csv")
 #!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
 
-#svg('position_count_DUET.svg')
-svg(outfile_duet_pos_count)
-print(paste0('plot filename:', outfile_duet_pos_count))
+#svg('position_count_PS.svg')
+svg(plot_pos_count_duet)
+print(paste0('plot filename:', plot_pos_count_duet))
 
 my_ats = 25 # axis text size
 my_als = 22 # axis label size