added get_results_mcsm_na.py run_get_results.py to retrieve results for each batch run of 20 for mcsm_na

mcsm_na/run_get_results.py

@@ -0,0 +1,38 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+Created on Fri Feb 12 12:15:26 2021
+
+@author: tanu
+"""
+#%% load packages
+import os
+homedir = os.path.expanduser('~')
+os.chdir (homedir + '/git/LSHTM_analysis/mcsm_na')
+from get_results_mcsm_na import *
+########################################################################
+# variables
+my_host = 'http://biosig.unimelb.edu.au'
+
+# TODO: add cmd line args
+#gene = 'gid'
+drug = 'streptomycin'
+datadir = homedir + '/git/Data'
+indir = datadir + '/' + drug + '/input'
+outdir = datadir + '/' + drug + '/output'
+
+# batch 1: 00.txt
+my_url_file =  outdir + '/mcsm_na_temp/mcsm_na_result_url_gid_b1.txt'
+my_suffix = 'gid_b1'
+
+#==========================
+# CALL: get_results() 
+# Data: gid+streptomycin
+#==========================
+print('Downloading results for:', my_url_file, '\nsuffix:', my_suffix)
+
+get_results(url_file  = my_url_file
+           , host_url = my_host
+           , output_dir = outdir
+           , outfile_suffix = my_suffix)
+#%%#####################################################################