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refactoring code to make it take command line args

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This commit is contained in:
Tanushree Tunstall 2020-04-06 19:03:41 +01:00
parent 0191ee3493
commit 3905a81c38
42 changed files with 456 additions and 7206 deletions
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5
meta_data_analysis/dssp_df.py
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@ -48,9 +48,10 @@ gene = 'pncA'
datadir = homedir + '/' + 'git/Data'
#=======
# input
# input from outdir
#=======
indir = datadir + '/' + drug + '/' + 'output'
#indir = datadir + '/' + drug + '/' + 'output'
outdir = datadir + '/' + drug + '/' + 'output'
#in_filename = 'pnca.dssp'
in_filename = gene.lower() +'.dssp'
infile = indir + '/' + in_filename