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added pdbtools from github source and modified seq.py to exclude hetatm seq extraction

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This commit is contained in:
Tanushree Tunstall 2020-05-12 14:08:08 +01:00
parent 7f66d5d19e
commit 3425d8fa2b
2 changed files with 6 additions and 2 deletions
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7
scripts/pdbtools_commands
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@ -1,9 +1,12 @@
# renumber
#======================================================
# renumber pdb file based on user defined start number
#======================================================
home/tanu/git/LSHTM_analysis/scripts/pdbtools/scripts/pdb_residue_renumber /home/tanu/git/Data/cycloserine/input/alr_complex_model.pdb -s 35 -r
/home/tanu/git/LSHTM_analysis/scripts/pdbtools/scripts/pdb_residue_renumber /home/tanu/git/Data/rifampicin/input/rpob_complex_model.pdb -s 29 -r
#======================================================
# extract seq from structure
#======================================================
/home/tanu/git/LSHTM_analysis/scripts/pdbtools/scripts/pdb_seq -a /home/tanu/git/Data/ethambutol/input/3byw.pdb > 3byw_seq.txt