various bugs

scripts/ml/ml_functions/MultClfs.py

@@ -354,9 +354,10 @@ def MultModelsCl(input_df, target
            y_pred   = cross_val_predict(model_pipeline
                                         , input_df
                                         , target
-                                        , cv = sel_cv
-                                        #, groups = group
-                                        , **njobs)
+                                        #, commented out thing,
+                                        , cv=sel_cv
+                                        , **njobs
+                                        )
             #_tn, _fp, _fn, _tp = confusion_matrix(y_pred, y).ravel() # internally
            tn, fp, fn, tp = confusion_matrix(y_pred, target).ravel()
     

scripts/ml/ml_iterator.py

@@ -48,8 +48,13 @@ ml_gene_drugD = {'pncA'   : 'pyrazinamide'
                  , 'gid'  : 'streptomycin'
                  }
 gene_dataD={}
-split_types = ['70_30', '80_20', 'sl']
-split_data_types = ['actual', 'complete']
+split_types = ['70_30',
+               '80_20',
+               'sl'
+               ]
+split_data_types = ['actual',
+                    'complete'
+                    ]
 
 for gene, drug in ml_gene_drugD.items():
     print ('\nGene:', gene