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bring in embb stuff which was in the wrong branch

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This commit is contained in:
Tanushree Tunstall 2021-10-28 11:18:13 +01:00
parent 0e44958585
commit 3368e949e8
6 changed files with 816 additions and 98 deletions
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6
scripts/data_extraction.py
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@ -70,7 +70,6 @@ arg_parser.add_argument('-m', '--make_dirs', help = 'Make dir for input and outp
arg_parser.add_argument('--debug', action ='store_true', help = 'Debug Mode')
args = arg_parser.parse_args()
#=======================================================================
#%% variable assignment: input and output paths & filenames
@ -81,9 +80,6 @@ indir = args.input_dir
outdir = args.output_dir
make_dirs = args.make_dirs
#drug = 'streptomycin'
#gene = 'gid'
#%% input and output dirs and files
#=======
# dirs
@ -1373,4 +1369,4 @@ if dr_muts.isin(other_muts).sum() & other_muts.isin(dr_muts).sum() > 0:
print(u'\u2698' * 50,
'\nEnd of script: Data extraction and writing files'
'\n' + u'\u2698' * 50 )
#%% end of script
#%% end of script