diff --git a/scripts/functions/lf_bp.R b/scripts/functions/lf_bp.R index 4dcf365..e983df2 100644 --- a/scripts/functions/lf_bp.R +++ b/scripts/functions/lf_bp.R @@ -18,10 +18,10 @@ lf_bp <- function(lf_df = lf_duet , dot_size = 3 , dot_transparency = 0.3 , violin_quantiles = c(0.25, 0.5, 0.75) # can be NULL - , my_ats = 22 # axis text size - , my_als = 20 # axis label size - , my_fls = 20 # facet label size - , my_pts = 22 # plot title size) + , my_ats = 11 # axis text size + , my_als = 10 # axis label size + , my_fls = 10 # facet label size + , my_pts = 11 # plot title size) , make_boxplot = FALSE , bp_width = c("auto", 0.5) , add_stats = TRUE @@ -140,87 +140,4 @@ lf_bp <- function(lf_df = lf_duet } return(OutPlot) -} - -############################# -# Barplot NO stats: plotly -# violin +/- -# barplot +/ -# beeswarm - -# TODO: plot_ly() -############################# -# lf_bp_plotly <- function(lf_df -# , p_title = "" -# , colour_categ = "" -# , x_grp = mutation_info -# , y_var = param_value -# , facet_var = param_type -# , n_facet_row = 1 -# , y_scales = "free_y" -# , colour_bp_strip = "khaki2" -# , dot_size = 3 -# , dot_transparency = 0.3 -# , violin_quantiles = c(0.25, 0.5, 0.75) # can be NULL -# , my_ats = 20 # axis text size -# , my_als = 18 # axis label size -# , my_fls = 18 # facet label size -# , my_pts = 22 # plot title size) -# #, make_boxplot = FALSE -# , bp_width = c("auto", 0.5) -# #, add_stats = FALSE -# #, stat_grp_comp = c("DM", "OM") -# #, stat_method = "wilcox.test" -# #, my_paired = FALSE -# #, stat_label = c("p.format", "p.signif") -# ){ -# -# OutPlotly = ggplot(lf_df, aes(x = eval(parse(text = x_grp)) -# , y = eval(parse(text = y_var)) -# , label1 = x_grp -# , label2 = y_var -# , lable3 = colour_categ) ) + -# -# facet_wrap(~ eval(parse(text = facet_var)) -# , nrow = n_facet_row -# , scales = y_scales) + -# -# geom_violin(trim = T -# , scale = "width" -# , draw_quantiles = violin_quantiles) + -# -# geom_beeswarm(priority = "density" -# , size = dot_size -# , alpha = dot_transparency -# , show.legend = FALSE -# , cex = 0.8 -# , aes(colour = factor(eval(parse(text = colour_categ) ) ) ) ) + -# theme(axis.text.x = element_text(size = my_ats) -# , axis.text.y = element_text(size = my_ats -# , angle = 0 -# , hjust = 1 -# , vjust = 0) -# , axis.title.x = element_text(size = my_ats) -# , axis.title.y = element_text(size = my_ats) -# , plot.title = element_text(size = my_pts -# , hjust = 0.5 -# , colour = "black" -# , face = "bold") -# , strip.background = element_rect(fill = colour_bp_strip) -# , strip.text.x = element_text(size = my_fls -# , colour = "black") -# , legend.title = element_text(color = "black" -# , size = my_als) -# , legend.text = element_text(size = my_ats) -# , legend.position = "none")+ -# -# labs(title = p_title -# , x = "" -# , y = "") -# -# OutPlotly = ggplotly(OutPlotly -# #, tooltip = c("label") -# ) -# return(OutPlotly) -# -# } +} \ No newline at end of file