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added pnca plot dir to generate plots that weren#t covered in the paper

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Tanushree Tunstall 2022-09-05 14:02:04 +01:00
parent 1dacebbaf6
commit 2cec743ae0
8 changed files with 1391 additions and 0 deletions
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scripts/plotting/plotting_thesis/pnca/plot_data_pnca.R Normal file
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#!/usr/bin/env Rscript
#=============
# Data: Input
#==============
source("~/git/LSHTM_analysis/config/pnca.R")
source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
####################################################
class(merged_df3)
df3 = subset(merged_df3, select = -c(pos_count))
#=======
# output
#=======
outdir_images = paste0("~/git/Writing/thesis/images/results/", tolower(gene), "/")
cat("plots will output to:", outdir_images)