diff --git a/scripts/ml/ml_functions/TEST_GetMLData.py b/scripts/ml/ml_functions/TEST_GetMLData.py index 040af65..be1c14b 100644 --- a/scripts/ml/ml_functions/TEST_GetMLData.py +++ b/scripts/ml/ml_functions/TEST_GetMLData.py @@ -5,6 +5,7 @@ Created on Thu Sep 1 12:22:27 2022 @author: tanu """ + getmldata(gene = "alr" , drug = "cycloserine" , data_combined_model = False diff --git a/scripts/ml/ml_iterator.py b/scripts/ml/ml_iterator.py index 0832708..b8a0a42 100755 --- a/scripts/ml/ml_iterator.py +++ b/scripts/ml/ml_iterator.py @@ -40,10 +40,9 @@ gene_model_paramD = {'data_combined_model' : False , 'write_outfile' : False } ############################################################################### #ml_genes = ["pncA", "embB", "katG", "rpoB", "gid"] - ml_gene_drugD = { - #'pncA' : 'pyrazinamide' - 'embB' : 'ethambutol' + 'pncA' : 'pyrazinamide' + , 'embB' : 'ethambutol' , 'katG' : 'isoniazid' , 'rpoB' : 'rifampicin' , 'gid' : 'streptomycin' @@ -53,13 +52,13 @@ split_types = [ '70_30', '80_20', 'sl', - #'rt', - #'none_bts' + 'rt', + 'none_bts' ] split_data_types = [ - 'actual', - #'complete' + #'actual', + 'complete' ] for gene, drug in ml_gene_drugD.items():