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added combined model FS code and run script

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Tanushree Tunstall 2022-09-03 12:28:36 +01:00
parent 78704dec5a
commit 2b953583e2
7 changed files with 1046 additions and 0 deletions
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scripts/ml/combined_model/run_cm_logo.py Normal file
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#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Sat Sep 3 09:43:22 2022
@author: tanu
"""
###############################################################################
homedir = os.path.expanduser("~")
sys.path.append(homedir + '/home/tanu/git/LSHTM_analysis/scripts/ml/combined_model')
sys.path.append(homedir + '/home/tanu/git/LSHTM_analysis/scripts/ml/ml_functions')
sys.path.append(homedir + '/home/tanu/git/LSHTM_analysis/scripts/ml')
from MultClfs import *
###############################################################################
#%% RUN: Combined model Baseline
outdir_cg = "/home/tanu/git/LSHTM_ML/output/combined/"
#===============
# Complete Data
#===============
CombinedModelML(cm_input_df = combined_df, outdir = outdir_cg, file_suffix = "complete")
CombinedModelML(cm_input_df = combined_df, outdir = outdir_cg, std_gene_omit=['alr'], file_suffix = "complete")
#===============
# Actual Data
#===============
CombinedModelML(cm_input_df = combined_df_actual, outdir = outdir_cg, file_suffix = "actual")
CombinedModelML(cm_input_df = combined_df_actual, outdir = outdir_cg, std_gene_omit=['alr'], file_suffix = "actual")