tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

ran mcsm_na for rpob's RNAP complex i.e 5UHC

Browse source
This commit is contained in:
Tanushree Tunstall 2021-11-19 07:48:42 +00:00
parent cee10cc540
commit 2925c89d11
7 changed files with 13 additions and 12 deletions
Download patch file Download diff file Expand all files Collapse all files

9
mcsm_na/run_format_results_mcsm_na.py Normal file → Executable file
View file

@ -52,15 +52,16 @@ if not outdir:
outdir_na = outdir + 'mcsm_na_results/'
# Input file
infile_mcsm_na = outdir_na + gene + '_output_combined_clean.tsv'
infile_mcsm_na = outdir_na + gene.lower() + '_output_combined_clean.tsv'
# Formatted output file
outfile_mcsm_na_f = outdir_na + gene + '_complex_mcsm_na_norm.csv'
outfile_mcsm_na_f = outdir_na + gene.lower() + '_complex_mcsm_na_norm.csv'
#==========================
#===========================================
# CALL: format_results_mcsm_na()
# Data: gid+streptomycin
#==========================
# Data: rpob+rifampicin, date: 18/11/2021
#===========================================
print('Formatting results for:', infile_mcsm_na)
mcsm_na_df_f = format_mcsm_na_output(mcsm_na_output_tsv = infile_mcsm_na)