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updating notes to running_scripts.py as running for another drug-target

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Tanushree Tunstall 2020-11-17 13:55:16 +00:00
parent d4cd5aea0a
commit 2911678177
3 changed files with 6 additions and 4 deletions
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7
scripts/running_scripts
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@ -9,9 +9,9 @@
./runFoldx.py -d pyrazinamide -g pncA
#========
# mcsm
# mcsm: specify chain if default is NOT 'A'
#========
./run_mcsm.py -d pyrazinamide -g pncA -s submit -l PZA
./run_mcsm.py -d pyrazinamide -g pncA -s submit -l PZA --debug
./run_mcsm.py -d pyrazinamide -g pncA -s get
./run_mcsm.py -d pyrazinamide -g pncA -s format
@ -19,7 +19,8 @@
# other struct params
#====================
./dssp_df.py -d pyrazinamide -g pncA
./kd_df.py -d pyrazinamide -g pncA # fixme: NO of cols says 2,but is actually 3
# Errors on matplot.lib warn=, so just comment it out for the timebeing!: MONKEY PATCH
./kd_df.py -d pyrazinamide -g pncA -fasta # fixme: NO of cols says 2, but is actually 3
./rd_df.py -d pyrazinamide -g pncA # fixme: input tsv file is sourced manually from website!
#==============================