From 26d0d7f42d1dac12832b84d1a4259acf6a338c61 Mon Sep 17 00:00:00 2001
From: Tanushree Tunstall <tanu@tunstall.in>
Date: Thu, 10 Sep 2020 20:15:00 +0100
Subject: [PATCH] updated notes with supp table colnames

---
 scripts/plotting/notes | 14 +++++++++++++-
 1 file changed, 13 insertions(+), 1 deletion(-)

diff --git a/scripts/plotting/notes b/scripts/plotting/notes
index 5cbe303..1dbb644 100644
--- a/scripts/plotting/notes
+++ b/scripts/plotting/notes
@@ -72,5 +72,17 @@ table(snpsBYpos_df$snpsBYpos)
 #======================   
 dr_mutations_pyrazinamide : 227  
 other_mutations_pyrazinamide : 197 
-                                                 
+                                     
+                                     
+#======================
+# suppl tables
+#======================   
+
+# sorted by position
+
+cols_to_output = c("mutationinformation", "mutation_info", "af", "or_mychisq", "neglogpval_fisher", "or_kin", "neglog_pwald_kin"
+, "duet_stability_change", "duet_outcome", "ligand_distance", "ligand_affinity_change", "ligand_outcome")
+
+# remove the ligand distance plot from "other plots"
+