From 25cfe39c7138a4ed7e5c7ef3ee5454f9facfd1e8 Mon Sep 17 00:00:00 2001 From: Tanushree Tunstall Date: Wed, 14 Sep 2022 17:11:39 +0100 Subject: [PATCH] saving --- scripts/aa_index_scripts/aa_header_selected_names.txt | 6 ++++++ scripts/aa_index_scripts/names_ML_selected | 3 +++ 2 files changed, 9 insertions(+) create mode 100644 scripts/aa_index_scripts/aa_header_selected_names.txt create mode 100644 scripts/aa_index_scripts/names_ML_selected diff --git a/scripts/aa_index_scripts/aa_header_selected_names.txt b/scripts/aa_index_scripts/aa_header_selected_names.txt new file mode 100644 index 0000000..29306a7 --- /dev/null +++ b/scripts/aa_index_scripts/aa_header_selected_names.txt @@ -0,0 +1,6 @@ +BENS940104 Genetic code matrix (Benner et al., 1994) +DOSZ010103 An amino acid similarity matrix based on the THREADER force field (Dosztanyi-Torda, 2001) +GIAG010101 Residue substitutions matrix from thermo/mesophilic to psychrophilic enzymes (Gianese et al., 2001) +MIYT790101 Amino acid pair distance (Miyata et al., 1979) +OVEJ920102 Environment-specific amino acid substitution matrix for alpha residues (Overington et al., 1992) +RISJ880101 Scoring matrix (Risler et al., 1988) diff --git a/scripts/aa_index_scripts/names_ML_selected b/scripts/aa_index_scripts/names_ML_selected new file mode 100644 index 0000000..e1677ad --- /dev/null +++ b/scripts/aa_index_scripts/names_ML_selected @@ -0,0 +1,3 @@ +grep -Ei "BENS940104|GIAG010101|DOSZ010103|RISJ880101|MIYT790101|OVEJ920102" aa_headerNames.txt + +grep -Ei "BENS940104|GIAG010101|DOSZ010103|RISJ880101|MIYT790101|OVEJ920102" aaindex/data/*