defined method for formatting mcsm_results

mcsm/mcsm_results.py

@@ -58,13 +58,10 @@ print('Output filename:', out_filename
       , '\nOutput path:', outdir
       , '\n=============================================================')
 
-#%% global variables
-#HOST = "http://biosig.unimelb.edu.au"
-#PREDICTION_URL = f"{HOST}/mcsm_lig/prediction"
 #=======================================================================
 def fetch_results(urltextfile):
     """
-    Extract results data from the results page
+    Extract results data using the prediction url
     
     @params result_page of request_results()
     @type response object
@@ -90,36 +87,37 @@ def fetch_results(urltextfile):
 
 def build_result_dict(web_result_raw):
     """
-    Format web results which is inconveniently preformatted!
+    Build dict of mcsm output for a single mutation
+    Format web results which is preformatted to enable building result dict
     # preformatted string object: Problematic!
-
-    # roughly bring these to the same format as the other
+    # make format consistent
     
-    @params web_result_raw directly from html parser extraction
+    @params web_result_raw: directly from html parser extraction
     @type string
         
     @returns result dict
     @type {}
     """
-    
-    # remove blank lines from output
+  
+# remove blank lines from output
     mytext = os.linesep.join([s for s in web_result_raw.splitlines() if s])
     
-    # Predicted affintiy change and DUET stability change cols 
-    # are are split over multiple lines and Mutation information is empty!
+# affinity change and DUET stability change cols are are split over 
+# multiple lines and Mutation information is empty!
     mytext = mytext.replace('ange:\n', 'ange: ')
-    #print(mytext)
+#    print(mytext)
     
-    # initiliase result_dict
+# initiliase result_dict
     result_dict = {}
     for line in mytext.split('\n'):
         fields = line.split(':')
-        #print(fields)
+#    	print(fields)
         if len(fields) > 1:  # since Mutaton information is empty
             dict_entry = dict([(x, y) for x, y in zip(fields[::2], fields[1::2])])
         result_dict.update(dict_entry)
         
-    return result_dict  
+    return result_dict
+   
 #=======================================================================
 #%% call function
 #request_results(infile_url)