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calculating mean stabilty per position

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Tanushree Tunstall 2020-07-16 10:37:40 +01:00
parent 1e785a08a1
commit 1f44f8ec0a
5 changed files with 172 additions and 9 deletions
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8
scripts/plotting/basic_barplots_PS.R
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@ -17,9 +17,9 @@ getwd()
########################################################################
# Read file: call script for combining df for PS #
########################################################################
#source("../combining_two_df.R")
#?????????????
#
#########################################################
#%% variable assignment: input and output paths & filenames
drug = 'pyrazinamide'
@ -87,9 +87,9 @@ if ( length(unique(my_df$mutationinformation)) != length(my_df$mutationinformati
my_df_u = my_df
}
#upos = unique(my_df_u$position)
upos = unique(my_df_u$position)
cat('Dim of clean df:'); cat(dim(my_df_u))
cat('\nNo. of unique mutational positions:'); cat(length(unique(my_df_u$position)))
cat('\nNo. of unique mutational positions:'); cat(length(upos))
########################################################################
# end of data extraction and cleaning for plots #