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corrected the pe colour mapping

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Tanushree Tunstall 2022-08-24 20:55:36 +01:00
parent 11b936f09b
commit 19b820e316
10 changed files with 61 additions and 90 deletions
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14
scripts/plotting/plotting_thesis/alr/basic_barplots_alr.R
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@ -7,21 +7,19 @@
#=============
# Data: Input
#==============
source("~/git/LSHTM_analysis/config/alr.R")
source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
#source("~/git/LSHTM_analysis/config/alr.R")
#source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
#cat("\nSourced plotting cols as well:", length(plotting_cols))
####################################################
class(merged_df3)
df3 = subset(merged_df3, select = -c(pos_count))
#=======
# output
#=======
outdir_images = paste0("~/git/Writing/thesis/images/results/", tolower(gene), "/")
cat("plots will output to:", outdir_images)
####################################################
class(merged_df3)
df3 = subset(merged_df3, select = -c(pos_count))
##########################################################
# blue, red bp
sts = 8