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fix HARDCODED HOMEDIRS

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This commit is contained in:
Tanushree Tunstall 2023-02-19 18:01:03 +00:00
parent db7e2912e1
commit 1571f430a5
50 changed files with 78 additions and 78 deletions
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2
scripts/plotting/structure_figures/mut_landscape.R
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@ -24,7 +24,7 @@ outfile_meta2 = paste0(outdir_images, "/", tolower(gene), "_mutpos_annot_cu.txt
#=============
# Input
#=============
df3_filename = paste0("/home/tanu/git/Data/", drug, "/output/", tolower(gene), "_merged_df3.csv")
df3_filename = paste0("~/git/Data/", drug, "/output/", tolower(gene), "_merged_df3.csv")
df3 = read.csv(df3_filename)
# Determine for each gene

2
scripts/plotting/structure_figures/mut_landscape_5uhc_rpob.R
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@ -19,7 +19,7 @@ outfile_meta2 = paste0(outdir_images, "/5uhc_", tolower(gene), "_mutpos_annot_c
#=============
# Input
#=============
df3_filename = paste0("/home/tanu/git/Data/", drug, "/output/", tolower(gene), "_merged_df3.csv")
df3_filename = paste0("~/git/Data/", drug, "/output/", tolower(gene), "_merged_df3.csv")
df3 = read.csv(df3_filename)
chain_suffix = ".C"

2
scripts/plotting/structure_figures/replaceBfactor_pdb_stability.R
View file

@ -39,7 +39,7 @@ outdir = paste0("~/git/Data", "/", drug, "/output")
# input
#======
in_filename_pdb = paste0(tolower(gene), "_complex.pdb")
#in_filename_pdb = "/home/tanu/git/Writing/thesis/images/results/gid/str_figures/gid_complex_copy_arpeg.pdb"
#in_filename_pdb = "~/git/Writing/thesis/images/results/gid/str_figures/gid_complex_copy_arpeg.pdb"
infile_pdb = paste0(indir, "/", in_filename_pdb)
cat(paste0("Input file:", infile_pdb) )