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fix HARDCODED HOMEDIRS

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This commit is contained in:
Tanushree Tunstall 2023-02-19 18:01:03 +00:00
parent db7e2912e1
commit 1571f430a5
50 changed files with 78 additions and 78 deletions
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2
scripts/functions/tests/test_aa_prop_bp.R
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@ -11,7 +11,7 @@ getwd()
# that will be used in testing the functions
#===========================================
source("plotting_data.R")
infile = "/home/tanu/git/Data/streptomycin/output/"
infile = "~/git/Data/streptomycin/output/"
pd_df = plotting_data(infile)
my_df = pd_df[[1]]
my_df_u = pd_df[[2]]

12
scripts/functions/tests/test_combining_dfs_plotting.R
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@ -38,12 +38,12 @@ source("combining_dfs_plotting.R")
#---------------------
#gene = 'gid'
#drug = 'streptomycin'
#source("/home/tanu/git/LSHTM_analysis/config/gid.R")
#source("/home/tanu/git/LSHTM_analysis/config/alr.R")
#source("/home/tanu/git/LSHTM_analysis/config/katg.R")
source("/home/tanu/git/LSHTM_analysis/config/pnca.R")
#source("/home/tanu/git/LSHTM_analysis/config/rpob.R")
#source("/home/tanu/git/LSHTM_analysis/config/embb.R")
#source("~/git/LSHTM_analysis/config/gid.R")
#source("~/git/LSHTM_analysis/config/alr.R")
#source("~/git/LSHTM_analysis/config/katg.R")
source("~/git/LSHTM_analysis/config/pnca.R")
#source("~/git/LSHTM_analysis/config/rpob.R")
#source("~/git/LSHTM_analysis/config/embb.R")

2
scripts/functions/tests/test_ed_pfm_data.R
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@ -2,7 +2,7 @@ source("~/git/LSHTM_analysis/scripts/Header_TT.R")
source("~/git/LSHTM_analysis/scripts/functions/ed_pfm_data.R")
# data msa: mut
my_data = read.csv("/home/tanu/git/Misc/practice_plots/pnca_msa_eg2.csv", header = F) #15 cols only
my_data = read.csv("~/git/Misc/practice_plots/pnca_msa_eg2.csv", header = F) #15 cols only
msaSeq_mut = my_data$V1
msa_seq = msaSeq_mut

2
scripts/functions/tests/test_plotting_data.R
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@ -19,7 +19,7 @@ import_dirs(drug_name = drug, gene_name = gene)
#-------------------------------
source("plotting_data.R")
infile_params = "/home/tanu/git/Data/streptomycin/output/gid_comb_stab_struc_params.csv"
infile_params = "~/git/Data/streptomycin/output/gid_comb_stab_struc_params.csv"
mcsm_comb_data = read.csv(infile_params, header = T)
pd_df = plotting_data(df = mcsm_comb_data