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added scripts and files to make AA index work for all drug targets, add header to the aa index output and fetch the aa index headers

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Tanushree Tunstall 2022-06-15 11:24:07 +01:00
parent 03321c261e
commit 1204f1faba
14 changed files with 1746 additions and 1969 deletions
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scripts/aa_index_scripts/aa_header_eg.csv Normal file
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ALTS910101,AZAE970101,AZAE970102,BASU010101,BENS940101,BENS940102,BENS940103,BENS940104,BETM990101,BLAJ010101,BONM030101,BONM030102,BONM030103,BONM030104,BONM030105,BONM030106,BRYS930101,CROG050101,CSEM940101,DAYM780301,DAYM780302,DOSZ010101,DOSZ010102,DOSZ010103,DOSZ010104,FEND850101,FITW660101,GEOD900101,GIAG010101,GODA950101,GONG920101,GRAR740104,HENS920101,HENS920102,HENS920103,HENS920104,JOHM930101,JOND920103,JOND940101,KANM000101,KAPO950101,KESO980101,KESO980102,KOLA920101,KOLA930101,KOSJ950100_RSA_SST,KOSJ950100_SST,KOSJ950110_RSA,KOSJ950115,LEVJ860101,LINK010101,LIWA970101,LUTR910101,LUTR910102,LUTR910103,LUTR910104,LUTR910105,LUTR910106,LUTR910107,LUTR910108,LUTR910109,MCLA710101,MCLA720101,MEHP950101,MEHP950102,MEHP950103,MICC010101,MIRL960101,MIYS850102,MIYS850103,MIYS930101,MIYS960101,MIYS960102,MIYS960103,MIYS990106,MIYS990107,MIYT790101,MOHR870101,MOOG990101,MUET010101,MUET020101,MUET020102,NAOD960101,NGPC000101,NIEK910101,NIEK910102,OGAK980101,OVEJ920100_RSA,OVEJ920101,OVEJ920102,OVEJ920103,PARB960101,PARB960102,PRLA000101,PRLA000102,QUIB020101,QU_C930101,QU_C930102,QU_C930103,RIER950101,RISJ880101,ROBB790102,RUSR970101,RUSR970102,RUSR970103,SIMK990101,SIMK990102,SIMK990103,SIMK990104,SIMK990105,SKOJ000101,SKOJ000102,SKOJ970101,TANS760101,TANS760102,THOP960101,TOBD000101,TOBD000102,TUDE900101,VENM980101,VOGG950101,WEIL970101,WEIL970102,ZHAC000101,ZHAC000102,ZHAC000103,ZHAC000104,ZHAC000105,ZHAC000106
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1 ALTS910101 AZAE970101 AZAE970102 BASU010101 BENS940101 BENS940102 BENS940103 BENS940104 BETM990101 BLAJ010101 BONM030101 BONM030102 BONM030103 BONM030104 BONM030105 BONM030106 BRYS930101 CROG050101 CSEM940101 DAYM780301 DAYM780302 DOSZ010101 DOSZ010102 DOSZ010103 DOSZ010104 FEND850101 FITW660101 GEOD900101 GIAG010101 GODA950101 GONG920101 GRAR740104 HENS920101 HENS920102 HENS920103 HENS920104 JOHM930101 JOND920103 JOND940101 KANM000101 KAPO950101 KESO980101 KESO980102 KOLA920101 KOLA930101 KOSJ950100_RSA_SST KOSJ950100_SST KOSJ950110_RSA KOSJ950115 LEVJ860101 LINK010101 LIWA970101 LUTR910101 LUTR910102 LUTR910103 LUTR910104 LUTR910105 LUTR910106 LUTR910107 LUTR910108 LUTR910109 MCLA710101 MCLA720101 MEHP950101 MEHP950102 MEHP950103 MICC010101 MIRL960101 MIYS850102 MIYS850103 MIYS930101 MIYS960101 MIYS960102 MIYS960103 MIYS990106 MIYS990107 MIYT790101 MOHR870101 MOOG990101 MUET010101 MUET020101 MUET020102 NAOD960101 NGPC000101 NIEK910101 NIEK910102 OGAK980101 OVEJ920100_RSA OVEJ920101 OVEJ920102 OVEJ920103 PARB960101 PARB960102 PRLA000101 PRLA000102 QUIB020101 QU_C930101 QU_C930102 QU_C930103 RIER950101 RISJ880101 ROBB790102 RUSR970101 RUSR970102 RUSR970103 SIMK990101 SIMK990102 SIMK990103 SIMK990104 SIMK990105 SKOJ000101 SKOJ000102 SKOJ970101 TANS760101 TANS760102 THOP960101 TOBD000101 TOBD000102 TUDE900101 VENM980101 VOGG950101 WEIL970101 WEIL970102 ZHAC000101 ZHAC000102 ZHAC000103 ZHAC000104 ZHAC000105 ZHAC000106
2 1.0 2.0 -1.0 0.1462 1.1 0.8 0.4 0.8 0.07 -1.0 0.4 0.5 0.4 5.2 5.3 4.9 0.022 -1.0 -0.07 1.0 -1.0 4.9 -5.95 0.3 -1.73 5.0 1.0 9.0 2.0 0.0 0.3 27.0 -1.0 -1.0 -1.0 -1.0 -1.0 1.0 0.0 -5.0 17.7 -1.78 0.19 0.0 0.3 3.7 5.1 4.6 3.5 -1.0 0.056 -2.81 1.0 -5.0 -2.0 5.0 6.0 4.0 0.0 1.0 5.0 4.0 1.0 0.94 0.77 1.69 -0.005081 0.1 -1.81 0.1 0.17 -2.03 0.08 6368.0 0.15 0.06 0.06 6.0 -0.56 -4.0 0.0 0.0 0.0 -3.0 0.1 0.11 -6.8 0.014 -1.0 0.022 0.014 0.6 -2.3 -0.53 -1.11 0.7 0.183 0.656 3.0 89.0 -0.2 -1.47 2.0 0.0 0.0 0.03615 0.08 0.04566 0.02263 0.00258 0.8 0.7 0.6 -3.4 33.0 0.41 0.87 0.08 -2.0 0.07816 5.5 0.0 1.0 -0.26 0.63 0.78 -1.64 0.17 0.48