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added scripts and files to make AA index work for all drug targets, add header to the aa index output and fetch the aa index headers

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Tanushree Tunstall 2022-06-15 11:24:07 +01:00
parent 03321c261e
commit 1204f1faba
14 changed files with 1746 additions and 1969 deletions
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scripts/aa_index_scripts/aa_headerMapping.sh Normal file
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#!/bin/sh
# get the list of AA indices and then combine these into one file
wget -c https://www.genome.jp/aaindex/AAindex/list_of_indices https://www.genome.jp/aaindex/AAindex/list_of_potentials https://www.genome.jp/aaindex/AAindex/list_of_matrices
cat list_of_* > combined_aa_list
# get the description for the header used in our script
for i in $(cat aa_headerT.csv); do
grep $i combined_aa_list >> aa_headerNames
done