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changed ml output dirs and ready to run fs

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This commit is contained in:
Tanushree Tunstall 2022-07-01 21:40:14 +01:00
parent 57348f1874
commit 11af00f1db
5 changed files with 67 additions and 152 deletions
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8
scripts/ml/ml_iterator.py
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@ -15,6 +15,8 @@ homedir = os.path.expanduser("~")
sys.path.append(homedir + '/git/LSHTM_analysis/scripts/ml/ml_functions')
sys.path
###############################################################################
outdir = homedir + '/git/LSHTM_ML/output/genes/'
#====================
# Import ML functions
#====================
@ -54,7 +56,9 @@ for gene, drug in ml_gene_drugD.items():
for split_type in split_types:
for data_type in split_data_types:
out_filename = (gene.lower()+'_'+split_type+'_'+data_type+'.csv')
out_filename = outdir + gene.lower() + '_' + split_type + '_' + data_type + '.csv'
tempD=split_tts(gene_dataD[gene_low]
, data_type = data_type
, split_type = split_type
@ -103,5 +107,5 @@ for gene, drug in ml_gene_drugD.items():
out_wf= pd.concat(mmDD, ignore_index = True)
out_wf_f = out_wf.sort_values(by = ['resampling', 'source_data', 'MCC'], ascending = [True, True, False], inplace = False)
out_wf_f.to_csv(('/home/tanu/git/Data/ml_combined/genes/'+out_filename), index = False)
out_wf_f.to_csv(('/home/tanu/git/Data/ml_combined/genes/'+ out_filename), index = False)