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Tanushree Tunstall 2021-02-10 11:53:20 +00:00
parent 600f829972
commit 0fd3e75ab0
4 changed files with 6 additions and 6 deletions
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dynamut/dynamut_reading_muts.py
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#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Wed Aug 19 14:33:51 2020
@author: tanu
"""
#%% load packages
import os,sys
import subprocess
import argparse
import requests
import re
import time
from bs4 import BeautifulSoup
import pandas as pd
import numpy as np
from pandas.api.types import is_string_dtype
from pandas.api.types import is_numeric_dtype
#%%============================================================================
# read mutation file
all_muts = pd.read_csv("/home/tanu/git/Data/streptomycin/output/snp_batches/snps_batch_00", header=None)
#https://gist.github.com/jrivero/1085501
n = 20
chunks = [all_muts[i:i+n] for i in range(0,all_muts.shape[0],n)]
#%%
muts_list = all_muts[0].values.tolist()
host_dynamut = 'http://biosig.unimelb.edu.au/dynamut'
mut_prediction = '/prediction'
submit_url = host_dynamut + mut_prediction