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script to combine all ors

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This commit is contained in:
Tanushree Tunstall 2020-06-19 14:43:23 +01:00
parent 3497d1ef54
commit 0c3c6fd143
3 changed files with 14 additions and 19 deletions
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scripts/af_or_calcs.R
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@ -59,7 +59,7 @@ cat(paste0('Reading infile2: gene associated metadata:', infile_metadata))
# outdir = 'git/Data/pyrazinamide/output'
outdir = paste0('~/git/Data', '/', drug, '/', 'output')
#out_filename = paste0(tolower(gene), '_meta_data_with_AF_OR.csv')
out_filename = paste0(tolower(gene), '_AF_OR.csv')
out_filename = paste0(tolower(gene), '_af_or.csv')
outfile = paste0(outdir, '/', out_filename)
cat(paste0('Output file with full path:', outfile))
#%% end of variable assignment for input and output files