lots of per-plot configs

scripts/plotting/get_plotting_dfs.R

@@ -49,9 +49,13 @@ if (!exists("infile_params") && exists("gene")){
   cat("\nInput file for mcsm comb data not specified, assuming filename: ", infile_params, "\n")
 }
 
-# Input 1: read <gene>_comb_afor.csv
+# Input 1:
 cat("\nReading mcsm combined data file: ", infile_params)
 mcsm_df = read.csv(infile_params, header = T)
+if (tolower(gene)%in%c("rpob")){
+  mcsm_df =  mcsm_df[mcsm_df$position!=1148,]
+}
+
 pd_df = plotting_data(mcsm_df
                       , gene = gene # ADDED
                       , lig_dist_colname = LigDist_colname