changed blind_test_input_df to blind_test_df in MultModelsCl

scripts/ml/running_ml_scripts.txt

@@ -1,51 +1,18 @@
-==================================
-# UQ run: same as ORIGINAL except
-# Features NOT including AA index, but includes active site annotations 
-# Date: 30/05/2022, but reran with from my desktop on 19/05/2022 to capture log and include active_site indication column
-# captures error: 2>$1
-=================================
-./pnca_config.py 2>&1 | tee log_pnca_config.txt
-./embb_config.py 2>&1 | tee log_embb_config.txt
-./gid_config.py 2>&1 | tee log_gid_config.txt
-./katg_config.py 2>&1 | tee log_katg_config.txt
-./rpob_config.py 2>&1 | tee log_rpob_config.txt
-./alr_config.py 2>&1 | tee log_alr_config.txt 
-
-# ERROR, as expected, too few values!
-
-########################################################################
-
-=================================
-# Split: ORIGINAL
-# actual values: training set
-# imputed values: blind set
-# All features including AA index
-# Date: 18/05/2022 # reran with minor formatting and log capture
-# captures error: 2>$1
-=================================
-./pnca_orig.py 2>&1 | tee log_pnca_orig.txt
-./embb_orig.py 2>&1 | tee log_embb_orig.txt
-./gid_orig.py 2>&1 | tee log_gid_orig.txt
-./katg_orig.py 2>&1 | tee log_katg_orig.txt
-./rpob_orig.py 2>&1 | tee log_rpob_orig.txt
-./alr_orig.py 2>&1 | tee log_alr_orig.txt # ERROR, as expected, too few values!
-
-########################################################################
-
 =================================
 # Split: 70/30
 # All features including AA index
-# Date: 17/05/2022 and 18/05/2022, reran with minor foramtting and log capture
+# Date: 22/06/2022
 # captures error: 2>$1
+# omitted drtype_labels
 =================================
-./pnca_7030.py 2>&1 | tee log_pnca_7030.txt
-./embb_7030.py 2>&1 | tee log_embb_7030.txt
-./gid_7030.py 2>&1 | tee log_gid_7030.txt
-./katg_7030.py 2>&1 | tee log_katg_7030.txt
-./rpob_7030.py 2>&1 | tee log_rpob_7030.txt
-./alr_7030.py 2>&1 | tee log_alr_7030.txt # ERROR, as expected, too few values!
-
-problems, CT values are non existing except for rouC
+./run_7030.py -g pncA -d pyrazinamide 2>&1 | tee log_pnca_7030.txt
+./run_7030.py -g embB -d ethambutol 2>&1 | tee log_embb_7030.txt
+./run_7030.py -g katG -d isoniazid 2>&1 | tee log_katg_7030.txt
+./run_7030.py -g rpoB -d rifampicin 2>&1 | tee log_rpob_7030.txt
+./run_7030.py -g gid -d streptomycin 2>&1 | tee log_gid_7030.txt
+./run_7030.py -g alr -d cycloserine 2>&1 | tee log_alr_7030.txt
+# alr: # ERROR, as expected, too few values!
+# gid: problems
 ########################################################################
 
 =================================
@@ -54,12 +21,7 @@ problems, CT values are non existing except for rouC
 # Date: 17/05/2022, 18:48
 # captures error: 2>$1
 =================================
-./pnca_8020.py 2>&1 | tee log_pnca_8020.txt
-./embb_8020.py 2>&1 | tee log_embb_8020.txt
-./gid_8020.py 2>&1 | tee log_gid_8020.txt
-./katg_8020.py 2>&1 | tee log_katg_8020.txt
-./rpob_8020.py 2>&1 | tee log_rpob_8020.txt
-./alr_8020.py 2>&1 | tee log_alr_8020.txt # ERROR, as expected, too few values!
+
 
 ########################################################################
 
@@ -69,12 +31,7 @@ problems, CT values are non existing except for rouC
 # Date: 17/05/2022, 18:48
 # captures error: 2>$1
 =================================
-./pnca_sl.py 2>&1 | tee log_pnca_sl.txt
-./embb_sl.py 2>&1 | tee log_embb_sl.txt
-./gid_sl.py 2>&1 | tee log_gid_sl.txt
-./katg_sl.py 2>&1 | tee log_katg_sl.txt
-./rpob_sl.py 2>&1 | tee log_rpob_sl.txt
-./alr_sl.py 2>&1 | tee log_alr_sl.txt # ERROR, as expected, too few values!
+
 
 ########################################################################
 =================================
@@ -85,12 +42,6 @@ problems, CT values are non existing except for rouC
 # Date: 18/05/2022
 # captures error: 2>$1
 =================================
-./pnca_rt.py 2>&1 | tee log_pnca_rt.txt
-./embb_rt.py 2>&1 | tee log_embb_rt.txt
-./gid_rt.py 2>&1 | tee log_gid_rt.txt
-./katg_rt.py 2>&1 | tee log_katg_rt.txt
-./rpob_rt.py 2>&1 | tee log_rpob_rt.txt
-./alr_rt.py 2>&1 | tee log_alr_rt.txt # ERROR, as expected, too few values!
 
 ########################################################################
 # COMPLETE Data: actual + na i.e imputed
@@ -102,12 +53,7 @@ problems, CT values are non existing except for rouC
 # Date: 18/05/2022
 # captures error: 2>$1
 =================================
-./pnca_cd_7030.py 2>&1 | tee log_pnca_cd_7030.txt
-./embb_cd_7030.py 2>&1 | tee log_embb_cd_7030.txt
-./gid_cd_7030.py 2>&1 | tee log_gid_cd_7030.txt
-./katg_cd_7030.py 2>&1 | tee log_katg_cd_7030.txt
-./rpob_cd_7030.py 2>&1 | tee log_rpob_cd_7030.txt
-./alr_cd_7030.py 2>&1 | tee log_alr_cd_7030.txt # ERROR, as expected, too few values!
+
 
 ########################################################################
 =================================
@@ -116,12 +62,6 @@ problems, CT values are non existing except for rouC
 # Date: 18/05/2022
 # captures error: 2>$1
 =================================
-./pnca_cd_8020.py 2>&1 | tee log_pnca_cd_8020.txt
-./embb_cd_8020.py 2>&1 | tee log_embb_cd_8020.txt
-./gid_cd_8020.py 2>&1 | tee log_gid_cd_8020.txt
-./katg_cd_8020.py 2>&1 | tee log_katg_cd_8020.txt
-./rpob_cd_8020.py 2>&1 | tee log_rpob_cd_8020.txt
-./alr_cd_8020.py 2>&1 | tee log_alr_cd_8020.txt # ERROR, as expected, too few values!
 
 =================================
 # Split: scaling law [COMPLETE DATA]
@@ -129,10 +69,5 @@ problems, CT values are non existing except for rouC
 # Date: 18/05/2022
 # captures error: 2>$1
 =================================
-./pnca_cd_sl.py 2>&1 | tee log_pnca_cd_sl.txt
-./embb_cd_sl.py 2>&1 | tee log_embb_cd_sl.txt
-./gid_cd_sl.py 2>&1 | tee log_gid_cd_sl.txt
-./katg_cd_sl.py 2>&1 | tee log_katg_cd_sl.txt
-./rpob_cd_sl.py 2>&1 | tee log_rpob_cd_sl.txt
-./alr_cd_sl.py 2>&1 | tee log_alr_cd_sl.txt # ERROR, as expected, too few values!
+