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changed blind_test_input_df to blind_test_df in MultModelsCl

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Tanushree Tunstall 2022-06-22 16:42:04 +01:00
parent bc12dbd7c2
commit 0350784d52
114 changed files with 107251 additions and 863011 deletions
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11
scripts/ml/log_alr_7030.txt
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@ -1,4 +1,4 @@
/home/tanu/git/LSHTM_analysis/scripts/ml/ml_data_7030.py:548: SettingWithCopyWarning:
/home/tanu/git/LSHTM_analysis/scripts/ml/ml_data_7030.py:464: SettingWithCopyWarning:
A value is trying to be set on a copy of a slice from a DataFrame
See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
@ -55,16 +55,13 @@ PASS: OR values imputed, data ready for ML
Total no. of features for aaindex: 123
No. of numerical features: 168
No. of categorical features: 7
PASS: x_features has no target variable
No. of columns for x_features: 175
No. of columns for x_features: 174
Traceback (most recent call last):
File "/home/tanu/git/LSHTM_analysis/scripts/ml/./alr_7030.py", line 19, in <module>
File "/home/tanu/git/LSHTM_analysis/scripts/ml/./run_7030.py", line 35, in <module>
setvars(gene,drug)
File "/home/tanu/git/LSHTM_analysis/scripts/ml/ml_data_7030.py", line 658, in setvars
File "/home/tanu/git/LSHTM_analysis/scripts/ml/ml_data_7030.py", line 636, in setvars
X, X_bts, y, y_bts = train_test_split(x_features, y_target
File "/home/tanu/anaconda3/envs/UQ/lib/python3.9/site-packages/sklearn/model_selection/_split.py", line 2454, in train_test_split
train, test = next(cv.split(X=arrays[0], y=stratify))