tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

more plot modifications dm and om plots mainly

Browse source
This commit is contained in:
Tanushree Tunstall 2022-08-08 15:32:16 +01:00
parent 4e6f10d1ba
commit 0234a8f77b
6 changed files with 501 additions and 358 deletions
Download patch file Download diff file Expand all files Collapse all files

30
scripts/plotting/get_plotting_dfs.R
View file

@ -118,39 +118,43 @@ geneL_na = c("gid", "rpob")
geneL_ppi2 = c("alr", "embb", "katg", "rpob")
all_dm_om_df = dm_om_wf_lf_data(df = merged_df3, gene = gene)
wf_duet = all_dm_om_df[['wf_duet']]
lf_duet = all_dm_om_df[['lf_duet']]
wf_mcsm_lig = all_dm_om_df[['wf_mcsm_lig']]
lf_mcsm_lig = all_dm_om_df[['lf_mcsm_lig']]
wf_foldx = all_dm_om_df[['wf_foldx']]
lf_foldx = all_dm_om_df[['lf_foldx']]
wf_deepddg = all_dm_om_df[['wf_deepddg']]
lf_deepddg = all_dm_om_df[['lf_deepddg']]
wf_dynamut2 = all_dm_om_df[['wf_dynamut2']]
lf_dynamut2 = all_dm_om_df[['lf_dynamut2']]
wf_consurf = all_dm_om_df[['wf_consurf']]
lf_consurf = all_dm_om_df[['lf_consurf']]
wf_snap2 = all_dm_om_df[['wf_snap2']]
lf_snap2 = all_dm_om_df[['lf_snap2']]
wf_provean = all_dm_om_df[['wf_provean']]
lf_provean = all_dm_om_df[['lf_provean']]
# NEW
wf_dist_gen = all_dm_om_df[['wf_dist_gen']]
lf_dist_gen = all_dm_om_df[['lf_dist_gen']]
if (tolower(gene)%in%geneL_na){
wf_mcsm_na = all_dm_om_df[['wf_mcsm_na']]
lf_mcsm_na = all_dm_om_df[['lf_mcsm_na']]
wf_mcsm_na = all_dm_om_df[['wf_mcsm_na']]
lf_mcsm_na = all_dm_om_df[['lf_mcsm_na']]
}
if (tolower(gene)%in%geneL_ppi2){
wf_mcsm_ppi2 = all_dm_om_df[['wf_mcsm_ppi2']]
lf_mcsm_ppi2 = all_dm_om_df[['lf_mcsm_ppi2']]
wf_mcsm_ppi2 = all_dm_om_df[['wf_mcsm_ppi2']]
lf_mcsm_ppi2 = all_dm_om_df[['lf_mcsm_ppi2']]
}
s2 = c("\nSuccessfully sourced other_plots_data.R")