From 013bba2503991bb3eb4e7fd335d04c8ae89ca910 Mon Sep 17 00:00:00 2001
From: Tanushree Tunstall <tanu@tunstall.in>
Date: Tue, 16 Feb 2021 10:51:06 +0000
Subject: [PATCH] sunmitting mcsm_na jobs manually

---
 mcsm_na/run_get_results.py |  5 ++---
 mcsm_na/run_submit.py      | 15 ++++-----------
 2 files changed, 6 insertions(+), 14 deletions(-)

diff --git a/mcsm_na/run_get_results.py b/mcsm_na/run_get_results.py
index 9c22909..8ef79ee 100755
--- a/mcsm_na/run_get_results.py
+++ b/mcsm_na/run_get_results.py
@@ -21,9 +21,8 @@ datadir = homedir + '/git/Data'
 indir = datadir + '/' + drug + '/input'
 outdir = datadir + '/' + drug + '/output'
 
-# batch 1: 00.txt
-my_url_file =  outdir + '/mcsm_na_temp/mcsm_na_result_url_gid_b1.txt'
-my_suffix = 'gid_b1'
+
+
 
 #==========================
 # CALL: get_results() 
diff --git a/mcsm_na/run_submit.py b/mcsm_na/run_submit.py
index f9c97f0..5519795 100755
--- a/mcsm_na/run_submit.py
+++ b/mcsm_na/run_submit.py
@@ -25,17 +25,10 @@ outdir = datadir + '/' + drug + '/output'
 
 my_nuc_type = 'RNA'
 my_pdb_file = indir + '/gid_complex.pdb'
-
-# batch 1: 00.txt: # RAN: 11 Feb, ~17:37, RETRIEVED: 15 Feb~ 12:18
-#my_mutation_list = outdir + '/snp_batches/20/snp_batch_00.txt'
-#my_suffix = 'gid_b1'
-
-
-# batch 2: 01.txt
-my_mutation_list = outdir + '/snp_batches/20/snp_batch_01.txt'
-my_suffix = 'gid_b2'
-# RAN: 15 Feb: 12:18
-
+#=============================================================================
+# batch 6: 05.txt # RAN: 15 Feb: 16:43
+my_mutation_list = outdir + '/snp_batches/20/snp_batch_05.txt'
+my_suffix = 'gid_b6'
 #==========================
 # CALL: submit_mcsm_na() 
 # Data: gid+streptomycin