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handled rpob 5uhc position offset in mcsm_ppi2

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Tanushree Tunstall 2022-01-04 10:45:29 +00:00
parent 46e2c93885
commit 00b84ccb1c
30 changed files with 395 additions and 63 deletions
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dynamut/format_results_dynamut.py Executable file → Normal file
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dynamut/format_results_dynamut2.py Executable file → Normal file
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dynamut/run_format_results_dynamut.py Executable file → Normal file
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dynamut/split_csv_chain.sh
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@ -31,7 +31,11 @@ split ../../../${INFILE} -l ${CHUNK} -d snp_batch_
#~/git/LSHTM_analysis/dynamut/split_csv_chain.sh alr_mcsm_formatted_snps_chain.csv snp_batches 50
# Date: 05/10/2021
#~/git/LSHTM_analysis/dynamut/split_csv_chain.sh alr_mcsm_formatted_snps_chain.csv snp_batches 20
#~/git/LSHTM_analysis/dynamut/split_csv_chain.sh alr_mcsm_formatted_snps_chain.csv snp_batches 20
# Date: 30/11/2021
#~/git/LSHTM_analysis/dynamut/split_csv_chain.sh katg_mcsm_formatted_snps_chain.csv snp_batches 20
for i in {00..40}; do mv snp_batch_${i} snp_batch_${i}.txt; done
# add .txt to the files
########################################################################