diff --git a/msa/global.R b/msa/global.R
index 80bcbbb..9d6cfc0 100644
--- a/msa/global.R
+++ b/msa/global.R
@@ -31,15 +31,17 @@ library(hash)
 # than previous approaches
 
 # system.time({
-# if(interactive()){
-#   source("~/git/LSHTM_analysis/scripts/Header_TT.R")
-# } else {
-  source("/srv/shiny-server/git/LSHTM_analysis/scripts/Header_TT.R")
-# }
+if(interactive()){
+  load_dir="~/git/"
+  
+} else {
+  load_dir="/srv/shiny-server/git/"
+}
+source(paste0(load_dir,"LSHTM_analysis/scripts/Header_TT.R"))
 
 load_target_globals=function(target){
   cat(paste0("Reloading Target: ", target))
-  source(paste0("~/git/LSHTM_analysis/config/", target, ".R")) # load per-target config file
+  source(paste0(load_dir, "LSHTM_analysis/config/", target, ".R")) # load per-target config file
   
   invisible(assign(paste0(target, "_merged_df3"), read.csv(paste0("~/git/Misc/shiny_dashboard/data/",target,"-merged_df3.csv")), envir = .GlobalEnv))
   invisible(assign(paste0(target, "_merged_df2"), read.csv(paste0("~/git/Misc/shiny_dashboard/data/",target,"-merged_df2.csv")), envir = .GlobalEnv))
@@ -60,12 +62,12 @@ load_target_globals=function(target){
       "mcsm_ppi2"#,
       #"mcsm_na"
     ), function(x){
-      wf_filename=paste0("~/git/Misc/shiny_dashboard/data/", tolower(gene), "-wf_", x ,".csv")
+      wf_filename=paste0(load_dir, "Misc/shiny_dashboard/data/", tolower(gene), "-wf_", x ,".csv")
       wf_var=paste0("wf_",x)
       if (file.exists(wf_filename)){
         invisible(assign(wf_var,read.csv(wf_filename), envir = .GlobalEnv)) # FILTH
       }
-      lf_filename=paste0("~/git/Misc/shiny_dashboard/data/", tolower(gene), "-lf_", x ,".csv")
+      lf_filename=paste0(load_dir, "Misc/shiny_dashboard/data/", tolower(gene), "-lf_", x ,".csv")
       lf_var=paste0(target, "_lf_",x)
       if (file.exists(lf_filename)){
         invisible(assign(lf_var,read.csv(lf_filename), envir = .GlobalEnv)) # FILTH
@@ -77,12 +79,12 @@ load_target_globals=function(target){
 load_msa_global=function(gene){
   drug=target_map[[gene]]
   in_filename_msa = paste0(tolower(gene), "_msa.csv")
-  infile_msa = paste0("~/git/Data/", drug, "/output/", in_filename_msa)
+  infile_msa = paste0(load_dir,"Data/", drug, "/output/", in_filename_msa)
   print(infile_msa)
   msa1 = read.csv(infile_msa, header = F)
   msa_seq = msa1$V1
   
-  infile_fasta = paste0("~/git/Data/", drug, "/input/", tolower(gene), "2_f2.fasta")
+  infile_fasta = paste0(load_dir,"Data/", drug, "/input/", tolower(gene), "2_f2.fasta")
   print(infile_fasta)
   msa2 = read.csv(infile_fasta, header = F)
   wt_seq = msa2$V1