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hurr durr

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This commit is contained in:
Tanushree Tunstall 2022-09-04 18:00:10 +01:00
parent 5ececa3f47
commit 74df62bb85
2 changed files with 141 additions and 1 deletions
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140
ml/global.R
View file

@ -189,3 +189,143 @@ makeplot = function(x, # the DataFrame to plot
# ggplotly() # ggplotly()
} }
if (interactive()){
server=shinyServer(function(input, output) {
observeEvent({
input$combined_model
input$combined_data
input$combined_training_genes
input$score_dropdown
input$resample_dropdown
input$drug_dropdown
input$split_dropdown
},{
combined_model = input$combined_model
selection = input$score_dropdown
resampler = input$resample_dropdown
selected_drug = input$drug_dropdown
selected_split = input$split_dropdown
combined_data = input$combined_data
combined_training_genes = input$combined_training_genes
selected_gene = combo[combo$drug == selected_drug,'gene']
# hide stuff if selected
if(combined_model == "combined") {
#if(combined_model == TRUE) {
hide("split_dropdown")
#show("resample_dropdown")
show("combined_data")
show("combined_training_genes")
filedata = paste0(combined_training_genes,
'genes_logo_skf_BT_',
selected_gene,
'_',
combined_data
)
print(filedata)
print('doing COMBINED plot')
output$plot <- renderPlot(makeplot(loaded_files[[filedata]],
selection,
"none", # always 'none' for combined plot
gene = combo[drug==selected_drug,"gene"],
combined_training_genes = combined_training_genes,
display_combined = TRUE,
)
)
# e.g.
# makeplot(loaded_files$`5genes_logo_skf_BT_pnca_actual`, "MCC", "none" , gene = 'foo', combined_training_genes = '1234', display_combined = TRUE)
} else {
show("split_dropdown")
#show("resample_dropdown")
hide("combined_data")
hide("combined_training_genes")
filedata = paste0(combo[drug==selected_drug,"gene"],
'_baselineC_',
selected_split
)
print(filedata)
print("doing GENE plot")
output$plot <- renderPlot(makeplot(loaded_files[[filedata]],
selection,
resampler,
gene = combo[drug==selected_drug,"gene"],
display_combined = FALSE,
)
)
}
# 6genes_logo_skf_BT_gid_complete
# filedata example for combined: 6genes_logo_skf_BT_embb_actual
# 6genes_logo_skf_BT_embb_combined
})
}
)
ui=dashboardPage(skin="purple",
dashboardHeader(title="Score Selector"),
dashboardSidebar(
radioButtons("combined_model",
label="Graph Model",
choiceNames = c("Combined", "Gene"),
choiceValues = c("combined", "gene"),
selected="gene"
),
# checkboxInput("combined_model",
# "Combined Model",
# value=FALSE
# ),
#),
radioButtons("combined_data",
label="Data Type",
choiceNames = c("Complete", "Actual", "Feature Selection"),
choiceValues = c("complete", "actual", "FS"),
selected="complete"
),
radioButtons("combined_training_genes",
label="Training Genes",
choiceNames = c("One", "Two", "Five", "Six"),
choiceValues = c("1", "2", "5","6"),
selected = "5"
),
radioButtons("drug_dropdown",
label="Drug",
choices = drug,
selected="pyrazinamide"
),
radioButtons("split_dropdown",
label="Split",
choices = split_type,
selected="cd_7030"
),
radioButtons("score_dropdown",
label="Score",
choices = scores,
selected="MCC"
),
radioButtons("resample_dropdown",
label="Resampling",
choices = resample_types,
selected="none" # "none" is a value
)
),
dashboardBody(
useShinyjs(),
#plotlyOutput("plot", height = 800),
plotOutput("plot", height = 800),
# %>% withSpinner(color="#0dc5c1"), # uncomment if you want the spinner
#downloadButton("save", "Download Plot"),
#DT::dataTableOut("plotdata"),
verbatimTextOutput("debug")
)
)
app <- shinyApp(ui, server)
runApp(app)
}

2
ml/ui.R
View file

@ -44,7 +44,7 @@ dashboardPage(skin="purple",
radioButtons("split_dropdown", radioButtons("split_dropdown",
label="Split", label="Split",
choices = split_type, choices = split_type,
selected="7030" selected="cd_7030"
), ),
radioButtons("score_dropdown", radioButtons("score_dropdown",
label="Score", label="Score",