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This commit is contained in:
Tanushree Tunstall 2022-09-22 00:05:59 +01:00
parent c896a04433
commit 5536a6df55
2 changed files with 15 additions and 7 deletions
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10
ml/global.R
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@ -32,7 +32,12 @@ split_type = c(
"cd_sl",
"none"
)
split_choicenames=c(
"70:30",
"80:20",
"Scaling law",
"CV thresholds"
)
split_file = c(
"_70_30_complete",
"_80_20_complete",
@ -68,6 +73,7 @@ metadata_cols = c("n_training_size", "n_test_size", "n_trainingY_ratio", "n_test
# hardcoded list of drugs
drug = c("ethambutol", "isoniazid", "pyrazinamide", "rifampicin", "streptomycin")
drug_choicenames = c("EmbB-ethambutol", "KatG-isoniazid", "PncA-pyrazinamide", "RpoB-rifampicin", "GidB-streptomycin")
gene = c("embb", "katg", "pnca", "rpob", "gid")
combo = data.frame(drug, gene)
@ -406,4 +412,4 @@ if (interactive()){
)
app <- shinyApp(ui, server)
runApp(app)
}
}